rs27439951 SNP Detail

Summary

• ID
  rs27439951
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121053543 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATTCTC TTCAAATTTT
  TAAAGATTTG GCAATAATAA GCTTGAATCC TTTCTTTTTA AAGCATCACT TATTTGTCAT
  AGTAGGGGCT GAACGACAGT CCTCACTTAG GCAAGCATGA CAACTGGGCT CGAGCCCAGC
  TAGCTCACTA AAAATTGACA GCCACTGGCA GAGACAAAGA ACTGTGAATG GAGCACAGGT
  R
  TGGCTGCCAT CTTCAGCCCT GCGCACTCTC ACATCCAATT GGCTTTACTC ACAGTGCCTG
  CCTGTGCTGG CCTTAGAGCC ATCACCTGTA TGTCACCAAC TGGCTTGGGT TTTCCCACTG
  GGATGACTCA CACCAGAAAC CAAGAAGCCT ATTCTCCCAA CCGCCAGATG GCAGAGCCTC
  AGCACCAAAA CCTCATATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37645979	NES09022978	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G
ss147381975	ENSMUSSNP1934769	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27439951					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645979	NES09022978	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121053543 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373765	regulatory region 373765			1117 bp downstream
Rr563789	regulatory region 563789			within coordinates
Rr563790	regulatory region 563790			157 bp proximal
Trp53bp1	transformation related protein 53 binding protein 1			Intron
				Noncoding-Transcript-Variant