rs27439971 SNP Detail

Summary

• ID
  rs27439971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118784134 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGCCCACC TATACAGTGA
  CACACTTCCT CCAACAAGGC CACACCTCCT AATAGTGCCA CTTCCCATGG GCCAAGCATA
  TTCAAACCAC CACACCATGC CTTCTGGAAA CCTTGCCCTG AGTTGCAAAC ATGAAGTCAA
  TGTTTCTTTG AACCAAGGAA GCAGAGTTGC TCAGCATATG TTGACTCTGT CTTGAGCCCT
  Y
  ACTTTGGTTA TAGTAACCGT GGCTTTGTCC CTGCCCCTAC CCTTGAGTCA CACCTTACTC
  AGGTGACTAG AGATACTTTT TACCAACAGA CTGGGTTATC TGGATCATGA CTGCTGCCGT
  AATCTAGGAT CAGGGAGTAA GCCAGTCGAT TTCTCCAGAG AAGTGAGCCA TATTCTAGTG
  ACCTGCTTAG AGACAAGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss37651698	NES09030450	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs27439971					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651698	NES09030450	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118784134 () rs orientation: forward

Symbol	Name	Function Class
Rr563384	regulatory region 563384	1708 bp proximal