rs27440054 SNP Detail

Summary

• ID
  rs27440054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118756424 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTG GTCCCGAGGT ACTTGTCCAT
  R
  GCCTCCGACC AGAGTGTCCC AGTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37651782	NES09030940	PERLEGEN	MM_PANEL2	f	SNP				G	G	G	G		G	A		G	A		G
ss45333809	mCV22545748	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A	G
ss147317304	ENSMUSSNP4208224	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G
ss320472653	CHEV_2_118751679	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27440054					SNP	G	G	G	G	G	G	G	A	G	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651782	NES09030940	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118756424 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	1415 bp downstream
Chst14	carbohydrate sulfotransferase 14	554 bp upstream
Cpgi12099	CpG island 12099	343 bp proximal
Rr563380	regulatory region 563380	63 bp proximal
Rr563381	regulatory region 563381	1356 bp proximal
Tssr19592	transcription start site region 19592	553 bp upstream
Tssr19593	transcription start site region 19593	612 bp upstream
Tssr19594	transcription start site region 19594	633 bp upstream