rs27440097 SNP Detail

Summary

• ID
  rs27440097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118711550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA GAATGCCTAT GGCAGACCCA
  K
  GAAGGACAGA GTCCACAGTC CAGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	SM/J
ss37651831	NES09031743	PERLEGEN	MM_PANEL2	f	SNP	T					G
ss45337289	mCV22801702	ABI	CRAMUS_MOUSE	f	SNP		T	T	G	T
ss147316191	ENSMUSSNP3456561	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
ss320472436	CHEV_2_118706805	CHEVERUD	SCREENING_POP	f	SNP							G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	KK/HlJ	LG/J	SM/J
rs27440097					SNP	T	T	T	G	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37651831	NES09031743	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118711550 () rs orientation: forward

Symbol	Name	Function Class
Ivd	isovaleryl coenzyme A dehydrogenase	within coordinates
Rr397218	regulatory region 397218	1793 bp upstream
Rr563358	regulatory region 563358	24 bp proximal
Rr563359	regulatory region 563359	1855 bp proximal