rs27440262 SNP Detail

Summary

• ID
  rs27440262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118622332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACTGCTCA CGGTGGGCTT
  GCTGGTTCTT CTTGAGTGGC AACTCAACAC TGCCGAAGCT CTCTTTCTCT CTGCCTCTGT
  GGGCCTCTCT GTAGACTTAA CCATTAACTA CTGCATCTCC TATCACTTGT GCCCACACCC
  GGACCGCCTG AGCCGTGTGG CCTTCTCTTT ACGTCAGATC AGCCGGGCCA CGGCGATGAC
  R
  ACTGGAGTGT TGTTTGCCTC TGGTGTGATC ATGCTGCCTT CCACTATACT GCTCTATCGG
  AAGCTGGGCA TCATCGTCAT GATGGTCAAG TTCCTTGGCT GTGGCTTTGC CAGCTTCTTC
  TTTCAGTCCC TGTGCTGTTT CTTCGGGCCA GAAAAGAACT GTGGCCAGAT CCTCTGGCCC
  TGCGCCCATC TGCCGTGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37652029	NES09026965	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27440262					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652029	NES09026965	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118622332 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12093	CpG island 12093			818 bp distal
Disp2	dispatched RND transporter family member 2			Coding-Synonymous
				Intron
Rr563341	regulatory region 563341			1192 bp distal
Rr563342	regulatory region 563342			1041 bp distal