rs27443136 SNP Detail

Summary

• ID
  rs27443136
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105910230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTAG GGAGCTGGAG AACCAGGTGT
  Y
  CTAAACTGCA AGTTTTCTTA GCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37615208	NES09058541	PERLEGEN	MM_PANEL2	f	SNP	T			T	C				C	T	C		C
ss45331264	mCV23755355	ABI	CRAMUS_MOUSE	f	SNP		T	C			C	C
ss147171298	ENSMUSSNP3819551	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C				C
ss320448476	CHEV_2_105920042	CHEVERUD	SCREENING_POP	f	SNP								T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27443136					SNP	T	T	C	T	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615208	NES09058541	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105910230 () rs orientation: forward

Symbol	Name	Function Class
Dcdc5	doublecortin domain containing 5	within coordinates
Gm74997	predicted gene, 74997	within coordinates
Gm75005	predicted gene, 75005	within coordinates
Tssr19274	transcription start site region 19274	1040 bp upstream
Tssr19275	transcription start site region 19275	1108 bp upstream
Tssr19276	transcription start site region 19276	1142 bp upstream