rs27443140 SNP Detail

Summary

• ID
  rs27443140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:105909489 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGCACTT CAGTATACAT
  TGAAGTCTCA TTTCCCCCTC CCCCAAATTG TATATATATA TATATATATA TATATATTTA
  AATGTTATAA AGATTACAAA GTCTGAAAAG TCATTTTTCA GAAAAATCTA GTAAGTGAGC
  TTCTGAGGTT GGGCTGAACC TGAAAGTTTT TTTGTGTTTG ATAGAGAGGA ATAAGACTGA
  Y
  GAATTTCATG AAAATTTCTC AGGTTTAAAG TTGAGTTTAA CTCCAGGGTG TAAATCTTCT
  ATGATTACCA CCTGCTTCCT AATTTATTTA ACTTAATAAT TTAACAACTA TACTAACTAC
  TATAAGTAGT GCTTTTCAGT ATTTGAGAGT TGTGCTGGAT TGAGTGGGCA AACAATTAAA
  TCTGTATAAA TCAAAACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37615212	NES09058557	PERLEGEN	MM_PANEL2	f	SNP	C	C		T	C	T	T
ss320448473	CHEV_2_105919301	CHEVERUD	SCREENING_POP	f	SNP			C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27443140					SNP	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37615212	NES09058557	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:105909489 () rs orientation: forward

Symbol	Name	Function Class
Dcdc5	doublecortin domain containing 5	within coordinates
Gm74997	predicted gene, 74997	within coordinates
Gm75005	predicted gene, 75005	within coordinates
Tssr19274	transcription start site region 19274	1781 bp upstream
Tssr19275	transcription start site region 19275	1849 bp upstream
Tssr19276	transcription start site region 19276	1883 bp upstream