rs27445232 SNP Detail

Summary

• ID
  rs27445232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118221270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTTACAC ATTTAAAAGT
  TTGGGTATCA ATCATTTAAG ATATAGTTTA CAATTCAAGG ACATTTAAAA AATACTACTT
  ATTTATCTTG TCTAGCTTTC CGTATCAGCA GAGGGTCTGC TTCCTCCCTT GGGAGGCATT
  GCAAACCCTC CCTCCTTCCT TCTGTCTCTG GGTCCACTGG TTGTTTATGA GTGCACTTAT
  Y
  TCTTTAGCCT TTGTCAACAT TGCATGCTCC GTCCTTTCAT TTTGACAGTA AATGAATGAA
  AGCTGTCCCA TCTAATTTGT ATTTCATTGG TTAGAAACCA TGTTCATGGT TTTTCTTTTT
  CTCTGAACTG TTTTTTGTTT GTTTGTTTGT TTGTTGGGTT TTTTGTTTTG GTTTGGTTTG
  GTTTTTTGGT TTTTCGAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37653103	NES09022165	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27445232					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653103	NES09022165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118221270 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	1814 bp distal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	Intron
Rr563227	regulatory region 563227	1667 bp distal
Rr563228	regulatory region 563228	1318 bp distal