rs27445233 SNP Detail

Summary

• ID
  rs27445233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118221032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATGCCT GTGGGGGTGT
  GTTCACAATG TAAACGCAAT GAAATAAATG TATGAATATG CAAATGTCAG CCTGAACACA
  GTGAGGACAA TGACCTCTTC TCATTTCAGG TCAAGTTTAC TGCCAGTAAA CTCAGATCAC
  TTTTTTTTAA CTTTTGGGGG ATATGTCATG GATTAAATGT CAGTTTTGAA ACATTTCATT
  Y
  ATGGATAGTC AAACAGTTCA GAGTGTATAT CAAAAATTAA TTTACACATT TAAAAGTTTG
  GGTATCAATC ATTTAAGATA TAGTTTACAA TTCAAGGACA TTTAAAAAAT ACTACTTATT
  TATCTTGTCT AGCTTTCCGT ATCAGCAGAG GGTCTGCTTC CTCCCTTGGG AGGCATTGCA
  AACCCTCCCT CCTTCCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37653104	NES09022164	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27445233					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653104	NES09022164	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118221032 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	1576 bp distal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	Intron
Rr397204	regulatory region 397204	1799 bp downstream
Rr563227	regulatory region 563227	1429 bp distal
Rr563228	regulatory region 563228	1080 bp distal
Tssr19554	transcription start site region 19554	1945 bp downstream
Tssr19555	transcription start site region 19555	1911 bp downstream
Tssr19556	transcription start site region 19556	1882 bp downstream
Tssr19557	transcription start site region 19557	1868 bp downstream