rs27445238 SNP Detail

Summary

• ID
  rs27445238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118217982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGCAGC TTAGGGGGAA
  ACTGAGGACA TGATGACAGT TTGAATGTGA GAGCTGAAAA AAAAAAAAAA AAGGCAGCAC
  TCAACAAATA TCTTCACTGT TTGTTGAGTT CTGCCATGTA TCCAGGCAGG GGTCCCTGGA
  AACAGAACAG GTCTCCAGCT GAAGGAGGGA GGAGGTGGTT TCTAAAAGGC CTTTGTGTTA
  Y
  CTTGTCTGAT CAGAGTGGTC TGAAGGTGAG ATGCCTAAGT CAACATTACT AAGTGAACAA
  GATAGATGCA AACAAGATTG ACAGAGACAT GTCACCTAAC CTAACTCGAG GCATGATAGT
  GCATTTTTTT TCTGAATTAA GCTACAGCAG GTAGACAACA AAGCAATAGC AATGTCTGAA
  TAGATAGGTT ACTTATATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37653116	NES09022246	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27445238					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653116	NES09022246	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118217982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	826 bp proximal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	1117 bp upstream
Rr397204	regulatory region 397204	950 bp upstream
Rr563227	regulatory region 563227	627 bp proximal
Rr563228	regulatory region 563228	1622 bp proximal
Tssr19554	transcription start site region 19554	1089 bp upstream
Tssr19555	transcription start site region 19555	1114 bp upstream
Tssr19556	transcription start site region 19556	1150 bp upstream
Tssr19557	transcription start site region 19557	1173 bp upstream