rs27445239 SNP Detail

Summary

• ID
  rs27445239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118217889 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTTACT TTGGCTACAA
  TAGGAAGAGC TGCTTAACAT GGGGCAAGGA TGAAGACGGC CGAATAGAGA GCCAGTGAAG
  AGGTGGTAAA AATGGGCTGC AGCTTAGGGG GAAACTGAGG ACATGATGAC AGTTTGAATG
  TGAGAGCTGA AAAAAAAAAA AAAAAGGCAG CACTCAACAA ATATCTTCAC TGTTTGTTGA
  R
  TTCTGCCATG TATCCAGGCA GGGGTCCCTG GAAACAGAAC AGGTCTCCAG CTGAAGGAGG
  GAGGAGGTGG TTTCTAAAAG GCCTTTGTGT TACCTTGTCT GATCAGAGTG GTCTGAAGGT
  GAGATGCCTA AGTCAACATT ACTAAGTGAA CAAGATAGAT GCAAACAAGA TTGACAGAGA
  CATGTCACCT AACCTAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37653118	NES09022244	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27445239					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37653118	NES09022244	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118217889 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12078	CpG island 12078	919 bp proximal
Eif2ak4	eukaryotic translation initiation factor 2 alpha kinase 4	1210 bp upstream
Rr397204	regulatory region 397204	1043 bp upstream
Rr563227	regulatory region 563227	720 bp proximal
Rr563228	regulatory region 563228	1715 bp proximal
Tssr19554	transcription start site region 19554	1182 bp upstream
Tssr19555	transcription start site region 19555	1207 bp upstream
Tssr19556	transcription start site region 19556	1243 bp upstream
Tssr19557	transcription start site region 19557	1266 bp upstream