rs27445640 SNP Detail

Summary

• ID
  rs27445640
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:86489311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTCTTTAA GAATTTAATT AATTAATTAT ACAGGAAAAA
  ACATAATGGT TTAATAAATC TTAATCTGGG AAAAGTAGAG GTTTCCCCTG TCCAGCATAA
  K
  TCTGGTGCCT GTCTGCCGGT ACATAGCAGG GGATTCTGTT TTGGGAATGG TTATACACTA
  GGGACTTGCC TTTCTGACCA ACCATTTATT ATAAAACATC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37612270	NES09111019	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27445640					SNP	G	G	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37612270	NES09111019	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:86489311 () rs orientation: forward

Symbol	Name	Function Class
Or8k38	olfactory receptor family 8 subfamily K member 38	Intron