rs27446604 SNP Detail

Summary

• ID
  rs27446604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127930136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTCCTCC CAAGCTGCCT
  CCTGTTGCCT CTCACGGCTG CACCAGGAGA GACGGCTCCT TTAGTCCACT TGGTTAGACA
  TAAACACTTG GACTTGGGAG AAGGTCAAGC TTTCCCAAGA TGTTTTGGAA TGTGTGCACC
  TCTCAGGATT TTGTGTTTTC CTTCATGTTT CTTCAGACTG TATGACCACA CTAACTGAGA
  R
  AGCTGTCTGT GGGTGTTTTT TACAGTATCT TCGAGATATT TGAGCAGGCC TCATCAAAGA
  AGTTTCACTG AACAAAAATG TGTGCTTTGC TCATATCTAC GAAGACTACT TTGTAATTTT
  TTTTTCAAGA GATTGAGGTT TCTTTCATGT CACTTAGGAG AGGCCACCAT GTGGGTGTGA
  CAGGAATGTG TAGGATTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37627028	NES09000120	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A	G	G	G	G		G	G		G
ss147551103	ENSMUSSNP3470317	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
ss320501499	CHEV_2_127913952	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27446604					SNP	G	G	A	G	A	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627028	NES09000120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127930136 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm23101	predicted gene, 23101	1708 bp upstream
Gm74890	predicted gene, 74890	1622 bp upstream
Rr564641	regulatory region 564641	881 bp distal
Rr564642	regulatory region 564642	within coordinates