rs27446608 SNP Detail

Summary

• ID
  rs27446608
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127929647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCCAAGGAC TGGTTGGTTT CCTGTGACCT TGAAGCAGCC
  TTGGTCACAG ACACTCACCT TTTATCCATT ATCCATTCAT GGGTCAAGAC ACAGAACCTT
  Y
  GTCCTCTTCC TTTGCATTCT GTCCGGCATC TTCTCTCTCT CCTCTCCTGA TCACCTGGAC
  CCCTGTTCAG GGGGAGAGAC TACTGGGTTC CATTCCGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627032	NES09000112	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		C	C	C	C	C
ss147551085	ENSMUSSNP6411848	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27446608					SNP	C	C	C	C	C	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627032	NES09000112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127929647 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm74890	predicted gene, 74890	1133 bp upstream
Rr564641	regulatory region 564641	392 bp distal
Rr564642	regulatory region 564642	117 bp proximal