rs27446615 SNP Detail

Summary

• ID
  rs27446615
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127928790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAGGGAG CCTACGTGAT
  TCTCAGTGGA CCTGGTTGGT TTTATTTAAA CTTCTCTGAC AGTCTCGATT CTTTCAGCAG
  ATTTATGAGA CTTGGCCAAA TTCCATGTCT CCGATTTATA CTTTTTAATT AAGACAAAGA
  ATCCCACACC TTCCTGGTTG GCCCCATCCT CCCTATCGTC ACCAGCGGGA ATGCCATACA
  R
  ATCAGACCAC TTGTGTCAAC TGTCGAGACA GTCAACTCAT GTCTTAGGTT CTTTGTCCTT
  GAATCGAAAA CAAACTCCTT TTCTTCTCAG GAATAACCAT TTTATCTCTT CCCTGATGGC
  ATGGACAGAA GTGCGGTATA ACCTATATTT AGGGTGTGCA TTTAGGAGAG CCGATAAAGG
  TCAGGCAAAC AGCCTGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37627039	NES09000105	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	G	A	A		A	A		A	A		G
ss147551042	ENSMUSSNP5068160	ENSEMBL	ENSEMBL_Sanger	f	SNP							A
ss320501492	CHEV_2_127912606	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27446615					SNP	A	G	A	G	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627039	NES09000105	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127928790 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm74890	predicted gene, 74890	276 bp upstream
Rr564640	regulatory region 564640	1791 bp distal
Rr564641	regulatory region 564641	78 bp proximal
Rr564642	regulatory region 564642	974 bp proximal