rs27446616 SNP Detail

Summary

• ID
  rs27446616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127928130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAAAGGT AGATACCAAA
  GGTACCAAGG CTGTTGGGAT TCTCTTTACG GAGTCACTGG AATGGAGATT GAGTGTTTTC
  TCAGGATGGC TCATGCAGTG GCTGAACCTA GGACTTTCTG GTGGTTCCCA CGGATGCGGG
  CTGGCCTTGT GATCTGCCTA GCCCACTGTG GGGAAGTCAC TGACACGGAT TTCAGCCCAT
  R
  TAGTGAGCAG GCAAGGAACT CTACATGCCC CCAAGCAGCC ACACCCAGCA TGCCATGTGT
  TTTTGCCATA ACCATGAGGT TGTCCCCCAC ATGGCAGTGC TGGCAGTCCC CAGGGAGGCC
  ACTCACCTTT CTGTCTCTTC CCTTCCAGTT GCACTAGAGC AGTTCACGAC GGCAGTGAGG
  CAATGTCCCA ACAGGGAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37627040	NES09000104	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	A	G		G		G	G		G	G		G
ss45228116	mCV25150706	ABI	CRAMUS_MOUSE	f	SNP		A				G		G
ss147551032	ENSMUSSNP6363977	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320501491	CHEV_2_127911946	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27446616					SNP	G	A	G	A	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627040	NES09000104	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127928130 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm74890	predicted gene, 74890	within coordinates
Rr564640	regulatory region 564640	1131 bp distal
Rr564641	regulatory region 564641	738 bp proximal
Rr564642	regulatory region 564642	1634 bp proximal