rs27446617 SNP Detail

Summary

• ID
  rs27446617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127928005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGAGGAA AAATGACTAA
  CTACATCTGG GGAAGTCTGG GGCTTGCTTG GGTCAACATC TGGGGACATA TTATGCTTCA
  ACCACATAGT GAATTAATGC AGTGGAAATC ACTGTGGAAG AGGGTAGTTA AAGGTAGATA
  CCAAAGGTAC CAAGGCTGTT GGGATTCTCT TTACGGAGTC ACTGGAATGG AGATTGAGTG
  Y
  TTTCTCAGGA TGGCTCATGC AGTGGCTGAA CCTAGGACTT TCTGGTGGTT CCCACGGATG
  CGGGCTGGCC TTGTGATCTG CCTAGCCCAC TGTGGGGAAG TCACTGACAC GGATTTCAGC
  CCATGTAGTG AGCAGGCAAG GAACTCTACA TGCCCCCAAG CAGCCACACC CAGCATGCCA
  TGTGTTTTTG CCATAACCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627041	NES09000103	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27446617					SNP	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627041	NES09000103	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127928005 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm74890	predicted gene, 74890	within coordinates
Rr564640	regulatory region 564640	1006 bp distal
Rr564641	regulatory region 564641	863 bp proximal
Rr564642	regulatory region 564642	1759 bp proximal