rs27446618 SNP Detail

Summary

• ID
  rs27446618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127927999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAAAGTT GAGGAAAAAT
  GACTAACTAC ATCTGGGGAA GTCTGGGGCT TGCTTGGGTC AACATCTGGG GACATATTAT
  GCTTCAACCA CATAGTGAAT TAATGCAGTG GAAATCACTG TGGAAGAGGG TAGTTAAAGG
  TAGATACCAA AGGTACCAAG GCTGTTGGGA TTCTCTTTAC GGAGTCACTG GAATGGAGAT
  Y
  GAGTGTTTTC TCAGGATGGC TCATGCAGTG GCTGAACCTA GGACTTTCTG GTGGTTCCCA
  CGGATGCGGG CTGGCCTTGT GATCTGCCTA GCCCACTGTG GGGAAGTCAC TGACACGGAT
  TTCAGCCCAT GTAGTGAGCA GGCAAGGAAC TCTACATGCC CCCAAGCAGC CACACCCAGC
  ATGCCATGTG TTTTTGCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627042	NES09000102	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27446618					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627042	NES09000102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127927999 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Gm74890	predicted gene, 74890	within coordinates
Rr564640	regulatory region 564640	1000 bp distal
Rr564641	regulatory region 564641	869 bp proximal
Rr564642	regulatory region 564642	1765 bp proximal