rs27446638 SNP Detail

Summary

• ID
  rs27446638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127901156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGTATTTA TTCCAGAATT GTAAGATAGG TTTGATGTTA
  AATATTAACC AATAATATAA ACAATGGAAG TTATAATACA AAAACAAAAA ACAAAACCTT
  Y
  CAAAGGAGAT GATGTGTATG ATAATATTTT TGTTGTTTCT GAGACAGGTG GCTCACTCTG
  TAGACCAGAG TGACCTAGAA CTCACAGAGA TTTCCAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37627062	NES09000605	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27446638					SNP	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627062	NES09000605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127901156 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397293	regulatory region 397293	1755 bp upstream
Rr564634	regulatory region 564634	1614 bp proximal