rs27446757 SNP Detail

Summary

• ID
  rs27446757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127857008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGCTGTAAA GAAGAAAAAA AATCAGCCCT TTCTTCCCCA
  CATTGTTTTT GCTAATGATG TTTATCACAG CAGTAGAAAA TAAGCTAAGA TAAAAAACAA
  R
  GACAGGAAAT CAGAAAGACC CAGTCACCAG CACCAGGAAT GACAGAGGAT GTGTGGTCAG
  GGAATTTGCA GCCATTGAAA GACCAGTAAG GGAGAAGCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627183	NES09001674	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A		A		G	G	G	G	G
ss45356142	mCV22732970	ABI	CRAMUS_MOUSE	f	SNP		G	G				G		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27446757					SNP	G	G	G	G	G	A	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627183	NES09001674	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127857008 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397292	regulatory region 397292	168 bp downstream
Tssr20037	transcription start site region 20037	95 bp upstream