rs27446758 SNP Detail

Summary

• ID
  rs27446758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127856662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCTTACAT ATGGCTAAAT CCTATATTAT TGTGTACTGT
  GACATACTTA GATCAAACGT CAAATCTCAG AGGAACTTAA AAAAAATATA GGACTGAGTG
  R
  CAGTGAGGCA CAGATAGAGT GATCCCATGA GGGAAATGGG GCAAGTCCCT GGGGCATTTT
  TGTGAAATGT GCCCAGACAA CTGGGGGTGG GGCCACGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627184	NES09001671	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A		A	A	G	G	G	G	G
ss45256224	mCV22732958	ABI	CRAMUS_MOUSE	f	SNP						G		A
ss147549431	ENSMUSSNP6057393	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27446758					SNP	G	G	G	G	A	G	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627184	NES09001671	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127856662 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Rr397292	regulatory region 397292	within coordinates
Rr564632	regulatory region 564632	within coordinates
Tssr20037	transcription start site region 20037	441 bp upstream