rs27446759 SNP Detail

Summary

• ID
  rs27446759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127856186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGATACAA GAGTGAAAAA AAAAAAAAAA GAGCCTCACT
  CATCCTATGA CAGGCCAGGA ATATAATGAA GGAAATTAGA AATAGCAACA GATGATGAAG
  R
  AAAAGAATCA GATGCTGAAT TTTATGGCAA GGATTTAAAA CTGGCCACCA TTTAAAAAAA
  AAATGCTTCT GTGATAATAA AATGTCTTCC AAACAAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37627185	NES09001667	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	A	A	G	G	G	G	G
ss147549422	ENSMUSSNP1972069	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27446759					SNP	G	G	G	G	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627185	NES09001667	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127856186 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	Intron
Rr397292	regulatory region 397292	354 bp upstream
Rr564632	regulatory region 564632	435 bp proximal
Tssr20037	transcription start site region 20037	917 bp upstream