rs27446760 SNP Detail

Summary

• ID
  rs27446760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127856011 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAGAACT CAACTCTCTC
  CTTCCCTGGC CTTAGTGAGA AGCAGAGAGG CTAAGCCCCT ATCTTCACCC AGCATCAACA
  ATCAACTTAA TGAGGTGGCA GAAAACAGGA CAACTTGACA TTCTGCCTCC TCCTTCCCAT
  GCCCAGGCAG GATAAATTAG TGGCCCATTT TTGTTAGGAC AATATTGGAC AAATGCAGAG
  R
  AAAGAGGAAC ATACTTACAC AGAATCTTTG GAAACTCAGA ATGAAACAGG ATCTCATTAT
  AACATCTGAA TAACCTGGAT ACAAGAGTGA AAAAAAAAAA AAAAGAGCCT CACTCATCCT
  ATGACAGGCC AGGAATATAA TGAAGGAAAT TAGAAATAGC AACAGATGAT GAAGGAAAAG
  AATCAGATGC TGAATTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37627186	NES09001664	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G	G	G	G	G		G	G		G
ss45309280	mCV22732950	ABI	CRAMUS_MOUSE	f	SNP		G	A					G
ss320501422	CHEV_2_127839827	CHEVERUD	SCREENING_POP	f	SNP											G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27446760					SNP	G	G	A	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627186	NES09001664	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127856011 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397292	regulatory region 397292	529 bp upstream
Rr564632	regulatory region 564632	610 bp proximal
Tssr20037	transcription start site region 20037	1092 bp upstream