rs27446765 SNP Detail

Summary

• ID
  rs27446765
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:127854624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCACCTTTA CCAATAGCCT TCCCTGGCCT CTCACAGTGT
  CAAGCCTCAG CTGCTCTCCA TGACACCTTT ATGTCTTCAA AACCACCACC TGTGTGACTC
  W
  CATGCCTTAC AAAGTCCAGC TGTACCACAA GGTATAACCT TGGCTATCTT TGGAGCACAG
  CTTCTTTGTG CTCTCAGAAA TCACTTCCTA GATTTCACC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37627191	NES09001752	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	A	A	A	T	T	A	T	T	A	T
ss147549387	ENSMUSSNP5948036	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27446765					SNP	T	T	T	T	T	T	A	A	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37627191	NES09001752	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127854624 () rs orientation: forward

Symbol	Name	Function Class
Acoxl	acyl-Coenzyme A oxidase-like	within coordinates
Rr397292	regulatory region 397292	1916 bp upstream
Rr564632	regulatory region 564632	1997 bp proximal