rs27447735 SNP Detail

Summary

• ID
  rs27447735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129146796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTTGCAG GTCATTTAAC
  CAAGTGGTGC TGAGATAGTG TTTGTCCACA TCCTGATATA TAGTTTGGTT GAGGGAATCA
  TTCATGACAA ACTTCTGCCT GACGAGCTTC ATCAGTTTGT ATCTCAAATC ACTCTGGTAG
  GTGTAAGGTG CTGATCTGGG TTGGATGGTC TCTAAAATCA TTACCAGAAG TTCAGGTTAC
  Y
  GCCTAGTTAC AAACCTAGAT GACATACACA TGCCAGTACA AGCATAAGAC ATGCTCTGAG
  AAGGACTGGA GGGTAGCTAA TCCAAGTGGA ACACCAGAGT TGAAACTAGA CACCAGAAGG
  CTTGATCCTA CCTGGGGTTG TACTATTGGT TTTTCTTTTG TAAATCAATT CATCATGTAG
  TATTTTTATT TTACTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37622260	NES09015745	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27447735					SNP	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622260	NES09015745	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129146796 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Tssr26214	transcription start site region 26214	1905 bp upstream
Tssr26215	transcription start site region 26215	1886 bp upstream
Tssr26216	transcription start site region 26216	1091 bp upstream
Tssr26217	transcription start site region 26217	1069 bp upstream
Tssr26218	transcription start site region 26218	149 bp upstream
Tssr26219	transcription start site region 26219	100 bp upstream
Tssr26220	transcription start site region 26220	68 bp upstream
Tssr26221	transcription start site region 26221	21 bp upstream
Tssr26222	transcription start site region 26222	1012 bp downstream
Tssr26223	transcription start site region 26223	1037 bp downstream
Tssr26224	transcription start site region 26224	1289 bp downstream
Tssr26225	transcription start site region 26225	1582 bp downstream
Tssr26226	transcription start site region 26226	1625 bp downstream
Tssr26227	transcription start site region 26227	1662 bp downstream
Tssr26228	transcription start site region 26228	1685 bp downstream
Tssr26229	transcription start site region 26229	1719 bp downstream
Tssr26230	transcription start site region 26230	1762 bp downstream
Tssr26231	transcription start site region 26231	1787 bp downstream
Tssr26232	transcription start site region 26232	1916 bp downstream