rs27447736 SNP Detail

Summary

• ID
  rs27447736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129146506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTTTTT AAAAAATAAA
  AACAATTAGG ATAGGGAATG TCTGTAAGCA GCAAGGAAAA GGCACATCAG GAAGCTCTCT
  GCTCTGGAGT AGTGAGCTGT CTTTTGGAAC ACATATTCTG TCCTTTGCAG GGATCCACTG
  TGGGAGTGGA GTGCTTCGTT CTGTTCTAGA AGAATTGTGA AAAGCCAGGG ATGTAGATAA
  Y
  TCTGTGCTTT GAAAACAGAA AGTTTGAAAG AGGCAATGAA ACTCGGGGGT GGGGCGAGGG
  GGGGGGAGTG ACCGACTGAT CATTACCTTC CTGTTGCAGG TCATTTAACC AAGTGGTGCT
  GAGATAGTGT TTGTCCACAT CCTGATATAT AGTTTGGTTG AGGGAATCAT TCATGACAAA
  CTTCTGCCTG ACGAGCTTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37622261	NES09015744	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27447736					SNP	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622261	NES09015744	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129146506 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Tssr26214	transcription start site region 26214	1615 bp upstream
Tssr26215	transcription start site region 26215	1596 bp upstream
Tssr26216	transcription start site region 26216	801 bp upstream
Tssr26217	transcription start site region 26217	779 bp upstream
Tssr26218	transcription start site region 26218	127 bp downstream
Tssr26219	transcription start site region 26219	178 bp downstream
Tssr26220	transcription start site region 26220	208 bp downstream
Tssr26221	transcription start site region 26221	227 bp downstream
Tssr26222	transcription start site region 26222	1302 bp downstream
Tssr26223	transcription start site region 26223	1327 bp downstream
Tssr26224	transcription start site region 26224	1579 bp downstream
Tssr26225	transcription start site region 26225	1872 bp downstream
Tssr26226	transcription start site region 26226	1915 bp downstream
Tssr26227	transcription start site region 26227	1952 bp downstream
Tssr26228	transcription start site region 26228	1975 bp downstream