rs27447738 SNP Detail

Summary

• ID
  rs27447738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129145943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAG CTGTAATTCT GATCATCAGG
  Y
  TCTCTTAACA GATAGGGACT GACTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
ss37622263	NES09015790	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ
rs27447738					SNP	T	T	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622263	NES09015790	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129145943 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Tssr26214	transcription start site region 26214	1052 bp upstream
Tssr26215	transcription start site region 26215	1033 bp upstream
Tssr26216	transcription start site region 26216	238 bp upstream
Tssr26217	transcription start site region 26217	216 bp upstream
Tssr26218	transcription start site region 26218	690 bp downstream
Tssr26219	transcription start site region 26219	741 bp downstream
Tssr26220	transcription start site region 26220	771 bp downstream
Tssr26221	transcription start site region 26221	790 bp downstream
Tssr26222	transcription start site region 26222	1865 bp downstream
Tssr26223	transcription start site region 26223	1890 bp downstream