rs27447740 SNP Detail

Summary

• ID
  rs27447740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:129144880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGA GTAACAGGAT ATTTAGAGTC
  R
  TCTCCTCCCG ACGAGTAGGC ATACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37622265	NES09015786	PERLEGEN	MM_PANEL2	f	SNP	A		A	G		A	A		A	A	A
ss45209107	mCV23184319	ABI	CRAMUS_MOUSE	f	SNP	A	A			G
ss147586271	ENSMUSSNP5186147	ENSEMBL	ENSEMBL_Sanger	f	SNP		A			G
ss320504792	CHEV_2_129128696	CHEVERUD	SCREENING_POP	f	SNP								G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27447740					SNP	A	A	A	G	G	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622265	NES09015786	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129144880 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	Coding-Synonymous
Tssr26213	transcription start site region 26213	1411 bp upstream
Tssr26214	transcription start site region 26214	within coordinates
Tssr26215	transcription start site region 26215	18 bp downstream
Tssr26216	transcription start site region 26216	804 bp downstream
Tssr26217	transcription start site region 26217	834 bp downstream
Tssr26218	transcription start site region 26218	1753 bp downstream
Tssr26219	transcription start site region 26219	1804 bp downstream
Tssr26220	transcription start site region 26220	1834 bp downstream
Tssr26221	transcription start site region 26221	1853 bp downstream