rs27447742 SNP Detail

Summary

• ID
  rs27447742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129144486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATACATT TACTGGACGA
  GAGTTATATG CTTCTCTATG GTAAAAATGT CTAATGCTAA AATGTGGATG TGTACGTGTG
  TGTTTGAGGG AGATGGTCAC AGAGAATATG GGCATGGGAC GAGAGACAAT AGCATTATCA
  ATGGACCACT GGAGTGGGAA GGCTAAGGCT TGAGTATTGT GGCTCCTAGT TTTTGGCTTC
  R
  TGTGAACCAG TGAGCTGTTA ACTCCTCTGT GATCTCAGTG GGCTTGTTTG AGATTTTCAG
  AGGCTGGCTC CATTGTCACA GTGCTCTGTA CTGTGTAAAT CAGATGGTGG ATGTCATCTT
  AAAGATCAAC AGAACAAATG GATGCTCTGG GATGGGAGGC AAATAGGGTC AAGGAGGAAA
  GGTGAGCAGG TGGTGGCTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37622267	NES09015782	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27447742					SNP	G	G	A	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622267	NES09015782	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129144486 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Tssr26208	transcription start site region 26208	1998 bp upstream
Tssr26209	transcription start site region 26209	1917 bp upstream
Tssr26210	transcription start site region 26210	1800 bp upstream
Tssr26211	transcription start site region 26211	1663 bp upstream
Tssr26212	transcription start site region 26212	1620 bp upstream
Tssr26213	transcription start site region 26213	1017 bp upstream
Tssr26214	transcription start site region 26214	389 bp downstream
Tssr26215	transcription start site region 26215	412 bp downstream
Tssr26216	transcription start site region 26216	1198 bp downstream
Tssr26217	transcription start site region 26217	1228 bp downstream