rs27447744 SNP Detail

Summary

• ID
  rs27447744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129144282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT ATACTTTAGG ACAGGAGGCA
  Y
  TGGATTATAC ATTTACTGGA CGAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss37622269	NES09015779	PERLEGEN	MM_PANEL2	f	SNP	C			C	T	T	C	C		C	T
ss147586256	ENSMUSSNP3816393	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320504789	CHEV_2_129128098	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs27447744					SNP	C	C	T	C	T	T	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622269	NES09015779	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129144282 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	1801 bp distal
Tssr20111	transcription start site region 20111	1918 bp downstream
Tssr26208	transcription start site region 26208	1794 bp upstream
Tssr26209	transcription start site region 26209	1713 bp upstream
Tssr26210	transcription start site region 26210	1596 bp upstream
Tssr26211	transcription start site region 26211	1459 bp upstream
Tssr26212	transcription start site region 26212	1416 bp upstream
Tssr26213	transcription start site region 26213	813 bp upstream
Tssr26214	transcription start site region 26214	593 bp downstream
Tssr26215	transcription start site region 26215	616 bp downstream
Tssr26216	transcription start site region 26216	1402 bp downstream
Tssr26217	transcription start site region 26217	1432 bp downstream