rs27447746 SNP Detail

Summary

• ID
  rs27447746
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129144015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAAAAGCG CTCCGCTGTT
  ACTTGCAGCT GGCCTGTGGG CTCATGAAGC TCTAGGGAAC TCAGGTCTTT ATAGTGAACT
  GAGATCCTTC TGTTGGGATG TCCCATCCCT ACCTTGTATT AGCTGGTCTG TCTCTCAGAG
  GGTCTGCTCT TGTCCCTCCC TCTAAATAAC ACTCCTCCAT TTTTCTGTCT TAGTGTCTTG
  K
  GCATTTTCTG TCCAACATCT TACTTTGTTG TTGTCTATTT GACTTATCTA CTGTACTAGA
  GGACTGTGTT CCATAAGGTT AGGAATTTTG GCTCACCACT CTAGATAGCT TTTAATGCTG
  TGCTTGAAAA ATAGAAGACT TTCAGTAATT AATAGCTTGT TGAAGGGATT CATGAATGAA
  GCTACTGCCC TACTCAGTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss37622271	NES09015820	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs27447746					SNP	G	G	G	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622271	NES09015820	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129144015 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	1534 bp distal
Tssr20111	transcription start site region 20111	1651 bp downstream
Tssr26204	transcription start site region 26204	1918 bp upstream
Tssr26205	transcription start site region 26205	1865 bp upstream
Tssr26206	transcription start site region 26206	1833 bp upstream
Tssr26207	transcription start site region 26207	1755 bp upstream
Tssr26208	transcription start site region 26208	1527 bp upstream
Tssr26209	transcription start site region 26209	1446 bp upstream
Tssr26210	transcription start site region 26210	1329 bp upstream
Tssr26211	transcription start site region 26211	1192 bp upstream
Tssr26212	transcription start site region 26212	1149 bp upstream
Tssr26213	transcription start site region 26213	546 bp upstream
Tssr26214	transcription start site region 26214	860 bp downstream
Tssr26215	transcription start site region 26215	883 bp downstream
Tssr26216	transcription start site region 26216	1669 bp downstream
Tssr26217	transcription start site region 26217	1699 bp downstream