rs27447747 SNP Detail

Summary

• ID
  rs27447747
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129143968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGAAAG CCTTTGGTGG
  CTTTCAACTG TATACCAAAT GACCAGGACC AAAAGCGCTC CGCTGTTACT TGCAGCTGGC
  CTGTGGGCTC ATGAAGCTCT AGGGAACTCA GGTCTTTATA GTGAACTGAG ATCCTTCTGT
  TGGGATGTCC CATCCCTACC TTGTATTAGC TGGTCTGTCT CTCAGAGGGT CTGCTCTTGT
  M
  CCTCCCTCTA AATAACACTC CTCCATTTTT CTGTCTTAGT GTCTTGGGCA TTTTCTGTCC
  AACATCTTAC TTTGTTGTTG TCTATTTGAC TTATCTACTG TACTAGAGGA CTGTGTTCCA
  TAAGGTTAGG AATTTTGGCT CACCACTCTA GATAGCTTTT AATGCTGTGC TTGAAAAATA
  GAAGACTTTC AGTAATTAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	PWD/PhJ
ss37622272	NES09015819	PERLEGEN	MM_PANEL2	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	PWD/PhJ
rs27447747					SNP	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622272	NES09015819	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129143968 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	1487 bp distal
Tssr20111	transcription start site region 20111	1604 bp downstream
Tssr26202	transcription start site region 26202	1998 bp upstream
Tssr26203	transcription start site region 26203	1976 bp upstream
Tssr26204	transcription start site region 26204	1871 bp upstream
Tssr26205	transcription start site region 26205	1818 bp upstream
Tssr26206	transcription start site region 26206	1786 bp upstream
Tssr26207	transcription start site region 26207	1708 bp upstream
Tssr26208	transcription start site region 26208	1480 bp upstream
Tssr26209	transcription start site region 26209	1399 bp upstream
Tssr26210	transcription start site region 26210	1282 bp upstream
Tssr26211	transcription start site region 26211	1145 bp upstream
Tssr26212	transcription start site region 26212	1102 bp upstream
Tssr26213	transcription start site region 26213	499 bp upstream
Tssr26214	transcription start site region 26214	907 bp downstream
Tssr26215	transcription start site region 26215	930 bp downstream
Tssr26216	transcription start site region 26216	1716 bp downstream
Tssr26217	transcription start site region 26217	1746 bp downstream