rs27447749 SNP Detail

Summary

• ID
  rs27447749
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129143450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGTGGGATG ACGTCTACCT
  CTGCATTTCG GTTGCAATCT GAAAGTAAAC CATGTACATA CACACAACAG CAAGTACCAG
  GAACTCCACA CGGCTTCCCT GATCTGAGCA GCTGACTGCT CTGGGGATAA CCCTTTTAGA
  CTGTGTTCTT CCTCTGAGTA TGAATACAAC CCGATAATAA CCTTCATGGC AAAATATATT
  K
  CGGATTCCAT GTTGTTGAGA CCCTCCCCCT TTTGTATTCT TTTAAATCTA AGAAAGCAAC
  CTGATTAGCT TCCTTTGGGC TTTGAACTTT CATTAAGACC TGTACTATCC AAACCTCTTC
  ATCTCCCCCT TTTACCCCCT TCCTTTGGTT ATTCTACCTC CAAATGACTA CACAGTCCTC
  TTCCTGTCTA CATGGTCACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37622274	NES09015817	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27447749					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622274	NES09015817	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129143450 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	969 bp distal
Tssr20111	transcription start site region 20111	1086 bp downstream
Tssr26199	transcription start site region 26199	1713 bp upstream
Tssr26200	transcription start site region 26200	1662 bp upstream
Tssr26201	transcription start site region 26201	1543 bp upstream
Tssr26202	transcription start site region 26202	1480 bp upstream
Tssr26203	transcription start site region 26203	1458 bp upstream
Tssr26204	transcription start site region 26204	1353 bp upstream
Tssr26205	transcription start site region 26205	1300 bp upstream
Tssr26206	transcription start site region 26206	1268 bp upstream
Tssr26207	transcription start site region 26207	1190 bp upstream
Tssr26208	transcription start site region 26208	962 bp upstream
Tssr26209	transcription start site region 26209	881 bp upstream
Tssr26210	transcription start site region 26210	764 bp upstream
Tssr26211	transcription start site region 26211	627 bp upstream
Tssr26212	transcription start site region 26212	584 bp upstream
Tssr26213	transcription start site region 26213	16 bp downstream
Tssr26214	transcription start site region 26214	1425 bp downstream
Tssr26215	transcription start site region 26215	1448 bp downstream