rs27447751 SNP Detail

Summary

• ID
  rs27447751
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129143150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCTCAGTGA GTCATGAAGA CTGTCAATGA TACCTGAATG
  TCCTAAATCC AGACAAGTGG GGGTGAAACG CTGCCTGTGT ACATCCTGTC TTTAATGCTG
  R
  CACAGGGAAC TCTCATCAAG TCTGAACACT GAAGATTGTA AGACTTCTAA ACATTCTGAC
  CCCTGAGTAT TCAAATTAAA CCTTTACAAA AACAGTGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37622276	NES09015815	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G	A	G	G	G		G	G	G	G
ss45200835	mCV23184295	ABI	CRAMUS_MOUSE	f	SNP		G					G		A
ss147586236	ENSMUSSNP2433196	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27447751					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37622276	NES09015815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129143150 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	669 bp distal
Tssr20111	transcription start site region 20111	786 bp downstream
Tssr26199	transcription start site region 26199	1413 bp upstream
Tssr26200	transcription start site region 26200	1362 bp upstream
Tssr26201	transcription start site region 26201	1243 bp upstream
Tssr26202	transcription start site region 26202	1180 bp upstream
Tssr26203	transcription start site region 26203	1158 bp upstream
Tssr26204	transcription start site region 26204	1053 bp upstream
Tssr26205	transcription start site region 26205	1000 bp upstream
Tssr26206	transcription start site region 26206	968 bp upstream
Tssr26207	transcription start site region 26207	890 bp upstream
Tssr26208	transcription start site region 26208	662 bp upstream
Tssr26209	transcription start site region 26209	581 bp upstream
Tssr26210	transcription start site region 26210	464 bp upstream
Tssr26211	transcription start site region 26211	327 bp upstream
Tssr26212	transcription start site region 26212	284 bp upstream
Tssr26213	transcription start site region 26213	316 bp downstream
Tssr26214	transcription start site region 26214	1725 bp downstream
Tssr26215	transcription start site region 26215	1748 bp downstream