rs27448132 SNP Detail

Summary

• ID
  rs27448132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129447220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAG TGAATGCGAA GTGTTTGCAC
  R
  TTCCTTAGTT ATCAGAAGGT GTGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37621295	NES09009635	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	G	G	A		G	A		A
ss147587945	ENSMUSSNP6281189	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G			G
ss320505124	CHEV_2_129431036	CHEVERUD	SCREENING_POP	f	SNP								G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27448132					SNP	A	A	G	A	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37621295	NES09009635	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129447220 () rs orientation: forward

Symbol	Name	Function Class
Rr564956	regulatory region 564956	1508 bp distal
Rr564957	regulatory region 564957	989 bp distal
Rr564958	regulatory region 564958	935 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20146	transcription start site region 20146	1556 bp downstream