rs27448135 SNP Detail

Summary

• ID
  rs27448135
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129446935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCA CACAGGAGCA ACAAATAGGC
  M
  GTACAAACCG GAAGGGAACC CCACA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss37621298	NES09009632	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	A	C		A		C
ss320505119	CHEV_2_129430751	CHEVERUD	SCREENING_POP	f	SNP							A		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs27448135					SNP	C	A	C	A	A	C	A	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37621298	NES09009632	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129446935 () rs orientation: forward

Symbol	Name	Function Class
Rr564956	regulatory region 564956	1223 bp distal
Rr564957	regulatory region 564957	704 bp distal
Rr564958	regulatory region 564958	1220 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20146	transcription start site region 20146	1271 bp downstream