rs27448137 SNP Detail

Summary

• ID
  rs27448137
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129446469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATG CCGATCTTAC CAATCCAGGC
  M
  GGTTCCTCTA GACATGCAAC TGGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37621300	NES09009630	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	C		C	C		C
ss147587920	ENSMUSSNP1830726	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss320505116	CHEV_2_129430285	CHEVERUD	SCREENING_POP	f	SNP							A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27448137					SNP	C	C	A	A	A	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37621300	NES09009630	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129446469 () rs orientation: forward

Symbol	Name	Function Class
Rr564956	regulatory region 564956	757 bp distal
Rr564957	regulatory region 564957	238 bp distal
Rr564958	regulatory region 564958	1686 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20146	transcription start site region 20146	805 bp downstream