rs27448141 SNP Detail

Summary

• ID
  rs27448141
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129444672 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT GTCTCTACAC ACATACATCA
  M
  ATTTTACACA TGGCAGCCTG CTGCG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss37621304	NES09009643	PERLEGEN	MM_PANEL2	f	SNP	C		A	C	C		A	A	C	C		A	C		C
ss45300687	mCV24477441	ABI	CRAMUS_MOUSE	f	SNP	C	C	A			A		A
ss147587895	ENSMUSSNP1855889	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A					A
ss320505111	CHEV_2_129428488	CHEVERUD	SCREENING_POP	f	SNP											A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs27448141					SNP	C	C	A	C	C	A	A	A	C	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37621304	NES09009643	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129444672 () rs orientation: forward

Symbol	Name	Function Class
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20144	transcription start site region 20144	1210 bp downstream
Tssr20145	transcription start site region 20145	535 bp downstream
Tssr20146	transcription start site region 20146	978 bp upstream