rs27448142 SNP Detail

Summary

• ID
  rs27448142
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129444532 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTCC CACTGTTCAC ACTTTCACCC
  K
  CAGACATCCC TCCGCAGACT ACCCA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
ss37621305	NES09009642	PERLEGEN	MM_PANEL2	f	SNP	G		T	G		T	T	G		G		G
ss45309843	mCV24477440	ABI	CRAMUS_MOUSE	f	SNP	G	G	T		T		T
ss147587890	ENSMUSSNP5571158	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T				T
ss320505110	CHEV_2_129428348	CHEVERUD	SCREENING_POP	f	SNP									T		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NZW/LacJ	SM/J	WSB/EiJ
rs27448142					SNP	G	G	T	G	T	T	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37621305	NES09009642	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129444532 () rs orientation: forward

Symbol	Name	Function Class
Rr564955	regulatory region 564955	1037 bp distal
Rr564956	regulatory region 564956	987 bp proximal
Rr564957	regulatory region 564957	1457 bp proximal
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20144	transcription start site region 20144	1070 bp downstream
Tssr20145	transcription start site region 20145	395 bp downstream
Tssr20146	transcription start site region 20146	1118 bp upstream