rs27452054 SNP Detail

Summary

• ID
  rs27452054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:125221387 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCAAGCA GAATTGGTGT AGGGAGGAAA ATGACCACTA
  GAAGGCAAAG GATTCTAGGC AACACATCCC ACTGTAGCCA TGCCTGGATC TAGCTTGATA
  Y
  ACACTGCATC TTTGACTGTG CAGGGAAGCT TTTCCTTTCT GCAGTCAACA CCCAGGTTGG
  CACCACTGCT AGTACCAGCC TCTCCTGAGA CCTCTGGGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37635079	NES09007546	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	T		T	T	C	C	T	T	C	T	C
ss45295788	mCV23882820	ABI	CRAMUS_MOUSE	f	SNP								C		T
ss147476241	ENSMUSSNP5973873	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27452054					SNP	C	C	C	C	C	C	T	C	T	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37635079	NES09007546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:125221387 () rs orientation: forward

Symbol	Name	Function Class
Fbn1	fibrillin 1	Intron
Rr564209	regulatory region 564209	49 bp distal