rs27453781 SNP Detail

Summary

• ID
  rs27453781
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121618174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTAGTAC TTCAGCCACG CCCGTTAAAC TAAACATCTA
  TGCAATTACA CTAAACCAAT TTATCTTTTC CGTAGGAGAA ATCTCAAATA CTGCTATCAT
  K
  TTTTGGTTTG GACAAAAATA ACAGAAGGGT CAGTTATCTG AAGAAGAGGA AGAAAACCTG
  GGTCAGAGTA GTGTTCCCAA GTAGAGATGT AGAGATGTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37645009	NES09028535	PERLEGEN	MM_PANEL2	f	SNP	G	T	G	T	G	T	G		T	G	T		G
ss147399697	ENSMUSSNP2012560	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				G
ss320485401	CHEV_2_121613429	CHEVERUD	SCREENING_POP	f	SNP								T				G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27453781					SNP	G	T	G	T	G	T	G	T	T	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645009	NES09028535	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121618174 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563873	regulatory region 563873			39 bp distal
Rr563874	regulatory region 563874			133 bp proximal