rs27453782 SNP Detail

Summary

• ID
  rs27453782
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121617940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAAGGAC GAGGAAGCTG
  TCTCTGGGGT TGCAGTTCCT AAGGACTGAC GGCTCTACTT CATGTAGGAC CCAGGAGCTG
  GATCACAAAT GAAATCTCTT CTTGTCAGGA TTAGGGGAAT TGAAACACAT GACCATCCAC
  TCCAACCCAC AAAGCACGCT GTGGTATGGT AACATGAAAT CTATTCCAGA CCAACGAGTG
  W
  GTCTGGACAA GGCACAAGAG TGTCAGATTT CAGACACATC TAAAAGGAGC AAGGAGCAAC
  AGAAGAGGCT GTGGGAAAAC AAGAAAAGGG GAAATTCAAA GGCTGAGAAA GGAAATCCCC
  CGTGCTGCTG ACTGGCTTAG TACTTCAGCC ACGCCCGTTA AACTAAACAT CTATGCAATT
  ACACTAAACC AATTTATCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37645010	NES09028534	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27453782					SNP	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645010	NES09028534	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121617940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563873	regulatory region 563873			within coordinates
Rr563874	regulatory region 563874			367 bp proximal