rs27453783 SNP Detail

Summary

• ID
  rs27453783
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121617934 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCTTCTTG TCAGGATTAG GGGAATTGAA ACACATGACC
  ATCCACTCCA ACCCACAAAG CACGCTGTGG TATGGTAACA TGAAATCTAT TCCAGACCAA
  S
  GAGTGAGTCT GGACAAGGCA CAAGAGTGTC AGATTTCAGA CACATCTAAA AGGAGCAAGG
  AGCAACAGAA GAGGCTGTGG GAAAACAAGA AAAGGGGAA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37645011	NES09028533	PERLEGEN	MM_PANEL2	f	SNP		C		C	G	G		C	C	C
ss45356553	mCV23337371	ABI	CRAMUS_MOUSE	f	SNP	G		C		G
ss147399688	ENSMUSSNP2459485	ENSEMBL	ENSEMBL_Sanger	f	SNP	G				G
ss320485399	CHEV_2_121613189	CHEVERUD	SCREENING_POP	f	SNP							C				G
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27453783					SNP	G	C	C	C	G	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645011	NES09028533	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121617934 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563873	regulatory region 563873			within coordinates
Rr563874	regulatory region 563874			373 bp proximal