rs27453787 SNP Detail

Summary

• ID
  rs27453787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121617609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCAGGCT GGGCATAGTG
  GTACATGCCC TTTCATCTCA GAGATGTGGA TCTCTGTAGT CTAGCCTAGT CTACAAAACC
  GGTTCCAAGC CAGCCAGGAA CAACATAATG AGATCCTTTT TCAAAAAACA ACAACAAGCA
  AACAAACAAA CAAGGACAAA CAGAAAAGCC AAAAGCAAGG TAGAAAGACG GAGAGAGAAA
  Y
  TGGTCAGATA GACTTTGAAA ACACTTAAGT AAAACACATT TTCTCCTCAA CAAGCAAGAA
  GAGGAAGCAA TACTACAGGT GGCAACTGCA TCAGCCCCAA GCATCAGAAC TGCAAAAGCT
  ACTTCCATCT CACCAAGGAC GAGGAAGCTG TCTCTGGGGT TGCAGTTCCT AAGGACTGAC
  GGCTCTACTT CATGTAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37645015	NES09028529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27453787					SNP	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645015	NES09028529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121617609 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563873	regulatory region 563873			206 bp proximal
Rr563874	regulatory region 563874			698 bp proximal