rs27453788 SNP Detail

Summary

• ID
  rs27453788
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121617586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCGGTTCCA AGCCAGCCAG GAACAACATA ATGAGATCCT
  TTTTCAAAAA ACAACAACAA GCAAACAAAC AAACAAGGAC AAACAGAAAA GCCAAAAGCA
  W
  GGTAGAAAGA CGGAGAGAGA AATTGGTCAG ATAGACTTTG AAAACACTTA AGTAAAACAC
  ATTTTCTCCT CAACAAGCAA GAAGAGGAAG CAATACTAC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37645016	NES09028528	PERLEGEN	MM_PANEL2	f	SNP		T	A	A		A	T	A	T		A	A	A		A
ss45367639	mCV23337383	ABI	CRAMUS_MOUSE	f	SNP		T			A		T
ss147399673	ENSMUSSNP1392826	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T					T
ss320485396	CHEV_2_121612841	CHEVERUD	SCREENING_POP	f	SNP										A				T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27453788					SNP	A	T	A	A	A	A	T	A	T	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645016	NES09028528	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121617586 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563873	regulatory region 563873			229 bp proximal
Rr563874	regulatory region 563874			721 bp proximal