rs27454006 SNP Detail

Summary

• ID
  rs27454006
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121488483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTAGATA TTCCAGAGAT
  TGGTTGAGAT TGTTAACCAG AATGCCTGAA CAGTTATGGG GAAATTTATG AAACCAACTT
  CCTGAAAGTG GAGAATCTGT GGAGTAACTG CCTGTATTAT TTGGAGCCTC ATGGAGACTT
  GTGCCTTGGA GCTCTGTGCA TCAGCAGATC TAGTTGTTGG TGGGGCTTAG GCTGTGGTTG
  M
  AAAGGCATGC AAGAGTCTAA GGAGGTAGGA GGACTACATG AGGTTAGAGA GACTCACATC
  TCACCCAGAC CAGGGCAGGA GGACAGACTG ACTGAACATG GTTGAATACA AGAGGCCTAA
  TGAAGTCTGA TGCTAATATT ATACACATTC CCCAAAGGCC AAAAGACTTA ATGAACACCG
  ACAAGGATGG AAAGAAACCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37645234	NES09028660	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27454006					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645234	NES09028660	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121488483 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563865	regulatory region 563865			1774 bp distal
Rr563866	regulatory region 563866			182 bp proximal