rs27454011 SNP Detail

Summary

• ID
  rs27454011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121487225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCCTTGT TCCTTTTCCC
  CAGACTCCCC GACTTGCTGT GAGTTGACAA ATCCTCTTAA AGACTCAACA GATATTGACA
  AACATTGATA AAAGCAATGG GTGAACCCCC CTTACCTCCC TGCCTCCTAA GAAACTCTAG
  GCTCCTAAAA CAGTTATTGC TTATTCATAC TTTGTTCCCA GGTAAAGCTG TATTGACCTG
  R
  AATGGCCTGT TGTCATGGAA CATGCAGTTC AGAGGCCCTT GCCTCCCCCC ACCCCCCGCT
  ATTGGGTTTC TGTATCAACT GCAACAATAC AATATTGGGT ACAATATTGG TGCCATTTCT
  TAGACTTGTT GTGAGGAGTA ACTAGGATAA TGTACTTAGT GTTTAGAACA CAATAAGAAC
  TCAAATTGTA CATTTTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37645239	NES09028709	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	G	A	G	G	G
ss147394655	ENSMUSSNP3313129	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27454011					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645239	NES09028709	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121487225 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563864	regulatory region 563864			1313 bp distal
Rr563865	regulatory region 563865			516 bp distal
Rr563866	regulatory region 563866			1440 bp proximal