rs27454013 SNP Detail

Summary

• ID
  rs27454013
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121486721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTACCC AAGAGTCCTC
  AGGAACCATG AGAGAAGCCA TGCAAGAGGT CTGCACTGCC AAAGCCATCG ATGTCAGAGT
  ATTTGGCACG CAAGTGAGAA ATGTCACCAT GAGCAAGGAT GAACTGCCAA AAGCATGAAT
  GAGGAAAGGA GTGAGGAGTG TCAAGGGCGT CCCCGAGGAA TGTTTGCATT CAGTGCCAGG
  Y
  GAAGCCACAC TCGAGGTCCA GAAGGGTAGT TAGAACAGTG GTCAGAGAAT AATATGCTCA
  TAAATAAATA AATAAATAAA TAAATAAATA AATAAATAAA TAACACCTAA GAGAGTGTAT
  GGGGGTCACA AGAGGGAATG CTACACAGGT CACATGGGAT GGGACATCAG AGGACCTTGA
  CGATTCACTC CAGTGAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37645241	NES09028707	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C	C	C	C	C	C	C	T	C	C
ss45291731	mCV23864559	ABI	CRAMUS_MOUSE	f	SNP	T	C						C
ss147394650	ENSMUSSNP3096066	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C						C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27454013					SNP	T	C	C	C	T	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37645241	NES09028707	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121486721 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Frmd5	FERM domain containing 5			Intron
				Noncoding-Transcript-Variant
Rr563864	regulatory region 563864			809 bp distal
Rr563865	regulatory region 563865			12 bp distal
Rr563866	regulatory region 563866			1944 bp proximal