rs27454078 SNP Detail

Summary

• ID
  rs27454078
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120548519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAGGTAAAT CAGACATCCC AGGGCCTACA ATACAAATAC
  CACCACAGCC ACCTGCCATG TGGGTCAGCA TAGACAGCAG GGAGTACATG GATAGTGGAT
  S
  ATGCTAGTTC ATAGCAGACT GTGTCTCTAA GACTGGCTCT CAGCGTGACA GACGCAAACA
  TCATGAAGAA GCAAAGCAGC TCGCTTACTG CAGTGCACAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37647015	NES09020506	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27454078					SNP	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37647015	NES09020506	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120548519 () rs orientation: forward

Symbol	Name	Function Class
Cdan1	codanin 1	within coordinates
Stard9	StAR related lipid transfer domain containing 9	within coordinates