rs27454081 SNP Detail

Summary

• ID
  rs27454081
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120546860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCAGAGG CAGGCAGATT
  TCTAAGTTTG AGGCCAACCA GGTCTACACA GTGAGTTCCT AGGTAGCCAG GGCAACACGG
  AGAAACCTGT CTCGAAAAAC AGTAAACAAA TAGAATGTGC CATTGAAGGT GATAATGGCA
  GTGTTTACAG TTCAGGGTTG AGATTCTACA TTCATCGGCT AGTGTATGAG CTCAGCTACT
  R
  TAGGAATCTG ACAGCACAGG GTGAACGGCC CCTCCTGAGA CCCGAGTCAG CAATCTGAAG
  CACACAGTCA ACTCTCTAGA GCTTCATCTT CCACATCTGT ACATTTAACC ATAGATCAAA
  AGATATTCAA GCAAAGTTTC TTGTCATAAT TATTTACATA TAGTTACATT AATTAAATCA
  TTTCTGGATA ACATATTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37647019	NES09020583	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27454081					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37647019	NES09020583	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120546860 () rs orientation: forward

Symbol	Name	Function Class
Cdan1	codanin 1	within coordinates
Stard9	StAR related lipid transfer domain containing 9	within coordinates